:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'cgat-report' .. highlight: bash cgat-report =========== .. conda:recipe:: cgat-report :replaces_section_title: :noindex: A report generator in python based on sphinx :homepage: https://github.com/AndreasHeger/CGATReport :license: BSD :recipe: /`cgat-report `_/`meta.yaml `_ .. conda:package:: cgat-report |downloads_cgat-report| |docker_cgat-report| :versions: ``0.9.1-0``,  ``0.9.0-0``,  ``0.8.4-0``,  ``0.8.1-0``,  ``0.8.0-1``,  ``0.8.0-0``,  ``0.7.6.1-1``,  ``0.3.7-1``,  ``0.3.7-0`` :depends bokeh: :depends docutils: :depends future: :depends matplotlib-base: ``>=2.0`` :depends matplotlib-venn: :depends nose: :depends numpy: :depends openpyxl: :depends pandas: :depends pillow: :depends python: :depends scipy: :depends seaborn: :depends six: :depends sphinx: :depends sqlalchemy: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install cgat-report and update with:: mamba update cgat-report To create a new environment, run:: mamba create --name myenvname cgat-report with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/cgat-report: (see `cgat-report/tags`_ for valid values for ````) .. |downloads_cgat-report| image:: https://img.shields.io/conda/dn/bioconda/cgat-report.svg?style=flat :target: https://anaconda.org/bioconda/cgat-report :alt: (downloads) .. |docker_cgat-report| image:: https://quay.io/repository/biocontainers/cgat-report/status :target: https://quay.io/repository/biocontainers/cgat-report .. _`cgat-report/tags`: https://quay.io/repository/biocontainers/cgat-report?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/cgat-report/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/cgat-report/README.html