:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'clan' .. highlight: bash clan ==== .. conda:recipe:: clan :replaces_section_title: :noindex: CLAN \- the CrossLinked reads ANalysis tool :homepage: https://sourceforge.net/projects/clan-mapping/ :license: Creative Commons BY-NC-ND 4.0 license :recipe: /`clan `_/`meta.yaml `_ :links: doi: :doi:`10.1016/j.isci.2019.05.038` .. conda:package:: clan |downloads_clan| |docker_clan| :versions: ``0.05-4``,  ``0.05-3``,  ``0.05-2``,  ``0.05-1``,  ``0.05-0`` :depends libgcc-ng: ``>=12`` :depends libstdcxx-ng: ``>=12`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install clan and update with:: mamba update clan To create a new environment, run:: mamba create --name myenvname clan with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/clan: (see `clan/tags`_ for valid values for ````) .. |downloads_clan| image:: https://img.shields.io/conda/dn/bioconda/clan.svg?style=flat :target: https://anaconda.org/bioconda/clan :alt: (downloads) .. |docker_clan| image:: https://quay.io/repository/biocontainers/clan/status :target: https://quay.io/repository/biocontainers/clan .. _`clan/tags`: https://quay.io/repository/biocontainers/clan?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/clan/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/clan/README.html