:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'clinker-py' .. highlight: bash clinker-py ========== .. conda:recipe:: clinker-py :replaces_section_title: :noindex: Gene cluster comparison figure generator :homepage: https://github.com/gamcil/clinker :license: MIT / MIT :recipe: /`clinker-py `_/`meta.yaml `_ :links: doi: :doi:`10.5281/zenodo.4326585` .. conda:package:: clinker-py |downloads_clinker-py| |docker_clinker-py| :versions: .. raw:: html
0.0.28-00.0.27-00.0.26-00.0.25-00.0.24-00.0.23-00.0.22-00.0.21-00.0.20-0 ``0.0.28-0``,  ``0.0.27-0``,  ``0.0.26-0``,  ``0.0.25-0``,  ``0.0.24-0``,  ``0.0.23-0``,  ``0.0.22-0``,  ``0.0.21-0``,  ``0.0.20-0``,  ``0.0.19-0``,  ``0.0.12-0`` .. raw:: html
:depends biopython: ``>=1.78`` :depends disjoint-set: ``>=0.7.1`` :depends gffutils: :depends numpy: ``>=1.13.3`` :depends python: :depends scipy: ``>=1.3.3`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install clinker-py and update with:: mamba update clinker-py To create a new environment, run:: mamba create --name myenvname clinker-py with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/clinker-py: (see `clinker-py/tags`_ for valid values for ````) .. |downloads_clinker-py| image:: https://img.shields.io/conda/dn/bioconda/clinker-py.svg?style=flat :target: https://anaconda.org/bioconda/clinker-py :alt: (downloads) .. |docker_clinker-py| image:: https://quay.io/repository/biocontainers/clinker-py/status :target: https://quay.io/repository/biocontainers/clinker-py .. _`clinker-py/tags`: https://quay.io/repository/biocontainers/clinker-py?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/clinker-py/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/clinker-py/README.html