:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'clippy' .. highlight: bash clippy ====== .. conda:recipe:: clippy :replaces_section_title: :noindex: An intuitive and interactive peak caller for CLIP data :homepage: https://github.com/ulelab/clippy :license: GPL-3.0-only :recipe: /`clippy `_/`meta.yaml `_ .. conda:package:: clippy |downloads_clippy| |docker_clippy| :versions: ``1.5.0-0``,  ``1.4.1-1``,  ``1.4.1-0``,  ``1.3.3-0``,  ``1.3.2-0``,  ``1.3.1-2``,  ``1.3.1-0`` :depends bedtools: ``2.26.0.*`` :depends dash: ``1.20.0.*`` :depends dash-bootstrap-components: ``0.11.3.*`` :depends matplotlib-base: :depends numpy: ``>=1.19.0,<1.20.3`` :depends numpy-base: ``>=1.19.0,<1.20.3`` :depends numpydoc: :depends pandas: :depends pybedtools: :depends python: ``>=3.8`` :depends scipy: :depends werkzeug: ``2.0.0.*`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install clippy and update with:: mamba update clippy To create a new environment, run:: mamba create --name myenvname clippy with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/clippy: (see `clippy/tags`_ for valid values for ````) .. |downloads_clippy| image:: https://img.shields.io/conda/dn/bioconda/clippy.svg?style=flat :target: https://anaconda.org/bioconda/clippy :alt: (downloads) .. |docker_clippy| image:: https://quay.io/repository/biocontainers/clippy/status :target: https://quay.io/repository/biocontainers/clippy .. _`clippy/tags`: https://quay.io/repository/biocontainers/clippy?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/clippy/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/clippy/README.html