:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'clsify' .. highlight: bash clsify ====== .. conda:recipe:: clsify :replaces_section_title: :noindex: Haplotyping of C. Liberibacter solanacearum from Sanger data. :homepage: https://github.com/holtgrewe/clsify :license: MIT / MIT :recipe: /`clsify `_/`meta.yaml `_ .. conda:package:: clsify |downloads_clsify| |docker_clsify| :versions: ``0.1.1-0`` :depends attrs: :depends bcftools: :depends bioconvert: :depends blast: :depends cattrs: :depends dash: :depends dash-bootstrap-components: :depends dash-core-components: :depends dash-html-components: :depends dash-renderer: :depends dash-table: :depends flask: :depends logzero: :depends numpy: :depends pandas: :depends plotly: :depends pysam: :depends python: ``>=3.6`` :depends requests: :depends vcfpy: :depends xlsxwriter: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install clsify and update with:: mamba update clsify To create a new environment, run:: mamba create --name myenvname clsify with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/clsify: (see `clsify/tags`_ for valid values for ````) .. |downloads_clsify| image:: https://img.shields.io/conda/dn/bioconda/clsify.svg?style=flat :target: https://anaconda.org/bioconda/clsify :alt: (downloads) .. |docker_clsify| image:: https://quay.io/repository/biocontainers/clsify/status :target: https://quay.io/repository/biocontainers/clsify .. _`clsify/tags`: https://quay.io/repository/biocontainers/clsify?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/clsify/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/clsify/README.html