:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'clustalw' .. highlight: bash clustalw ======== .. conda:recipe:: clustalw :replaces_section_title: :noindex: ClustalW2 is a general purpose multiple sequence alignment program for DNA or proteins. :homepage: http://www.clustal.org/clustal2/ :license: GNU Lesser GPL :recipe: /`clustalw `_/`meta.yaml `_ :links: biotools: :biotools:`trinity`, doi: :doi:`10.1038/nbt.1883`, usegalaxy-eu: :usegalaxy-eu:`clustalw` .. conda:package:: clustalw |downloads_clustalw| |docker_clustalw| :versions: .. raw:: html
2.1-102.1-92.1-82.1-72.1-62.1-52.1-42.1-32.1-2 ``2.1-10``,  ``2.1-9``,  ``2.1-8``,  ``2.1-7``,  ``2.1-6``,  ``2.1-5``,  ``2.1-4``,  ``2.1-3``,  ``2.1-2``,  ``2.1-1``,  ``2.1-0`` .. raw:: html
:depends libgcc-ng: ``>=12`` :depends libstdcxx-ng: ``>=12`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install clustalw and update with:: mamba update clustalw To create a new environment, run:: mamba create --name myenvname clustalw with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/clustalw: (see `clustalw/tags`_ for valid values for ````) .. |downloads_clustalw| image:: https://img.shields.io/conda/dn/bioconda/clustalw.svg?style=flat :target: https://anaconda.org/bioconda/clustalw :alt: (downloads) .. |docker_clustalw| image:: https://quay.io/repository/biocontainers/clustalw/status :target: https://quay.io/repository/biocontainers/clustalw .. _`clustalw/tags`: https://quay.io/repository/biocontainers/clustalw?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/clustalw/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/clustalw/README.html