:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'cnvnator' .. highlight: bash cnvnator ======== .. conda:recipe:: cnvnator :replaces_section_title: :noindex: Tool for calling copy number variations. :homepage: https://github.com/abyzovlab/CNVnator :license: MIT :recipe: /`cnvnator `_/`meta.yaml `_ .. conda:package:: cnvnator |downloads_cnvnator| |docker_cnvnator| :versions: .. raw:: html
0.4.1-110.4.1-100.4.1-90.4.1-80.4.1-70.4.1-60.4.1-50.4.1-40.4.1-3 ``0.4.1-11``,  ``0.4.1-10``,  ``0.4.1-9``,  ``0.4.1-8``,  ``0.4.1-7``,  ``0.4.1-6``,  ``0.4.1-5``,  ``0.4.1-4``,  ``0.4.1-3``,  ``0.4.1-2``,  ``0.4.1-1``,  ``0.4.1-0`` .. raw:: html
:depends _openmp_mutex: ``>=4.5`` :depends htslib: ``>=1.21,<1.23.0a0`` :depends libgcc: ``>=13`` :depends libstdcxx: ``>=13`` :depends libzlib: ``>=1.3.1,<2.0a0`` :depends matplotlib-base: :depends ncurses: ``>=6.5,<7.0a0`` :depends numpy: :depends perl-getopt-long: :depends python: ``>=3.12,<3.13.0a0`` :depends root_base: ``>=6.32.2,<6.32.3.0a0`` :requirements: :additional platforms: .. raw:: html linux-aarch64 .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install cnvnator and update with:: mamba update cnvnator To create a new environment, run:: mamba create --name myenvname cnvnator with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/cnvnator: (see `cnvnator/tags`_ for valid values for ````) .. |downloads_cnvnator| image:: https://img.shields.io/conda/dn/bioconda/cnvnator.svg?style=flat :target: https://anaconda.org/bioconda/cnvnator :alt: (downloads) .. |docker_cnvnator| image:: https://quay.io/repository/biocontainers/cnvnator/status :target: https://quay.io/repository/biocontainers/cnvnator .. _`cnvnator/tags`: https://quay.io/repository/biocontainers/cnvnator?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/cnvnator/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/cnvnator/README.html