:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'codan' .. highlight: bash codan ===== .. conda:recipe:: codan :replaces_section_title: :noindex: CDS prediction in eukaryotic transcripts. :homepage: https://github.com/pedronachtigall/CodAn :license: GPLv3 :recipe: /`codan `_/`meta.yaml `_ :links: https: :https:`//doi.org/10.1093/bib/bbaa045` .. conda:package:: codan |downloads_codan| |docker_codan| :versions: ``1.2-0``,  ``1.1-0`` :depends biopython: :depends blast: :depends perl: :depends perl-bioperl: :depends perl-mce: :depends python: ``>=3.6`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install codan and update with:: mamba update codan To create a new environment, run:: mamba create --name myenvname codan with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/codan: (see `codan/tags`_ for valid values for ````) .. |downloads_codan| image:: https://img.shields.io/conda/dn/bioconda/codan.svg?style=flat :target: https://anaconda.org/bioconda/codan :alt: (downloads) .. |docker_codan| image:: https://quay.io/repository/biocontainers/codan/status :target: https://quay.io/repository/biocontainers/codan .. _`codan/tags`: https://quay.io/repository/biocontainers/codan?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/codan/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/codan/README.html