:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'cogclassifier' .. highlight: bash cogclassifier ============= .. conda:recipe:: cogclassifier :replaces_section_title: :noindex: Classify prokaryote protein sequences into COG functional category :homepage: https://github.com/moshi4/COGclassifier/ :license: MIT :recipe: /`cogclassifier `_/`meta.yaml `_ .. conda:package:: cogclassifier |downloads_cogclassifier| |docker_cogclassifier| :versions: ``1.0.5-0``,  ``1.0.4-0``,  ``1.0.3-0`` :depends altair: ``>=4.2.0,<5.0.0`` :depends pandas: ``>=1.4.1,<2.0.0`` :depends python: ``>=3.6,<4.0`` :depends requests: ``>=2.27.1,<3.0.0`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install cogclassifier and update with:: mamba update cogclassifier To create a new environment, run:: mamba create --name myenvname cogclassifier with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/cogclassifier: (see `cogclassifier/tags`_ for valid values for ````) .. |downloads_cogclassifier| image:: https://img.shields.io/conda/dn/bioconda/cogclassifier.svg?style=flat :target: https://anaconda.org/bioconda/cogclassifier :alt: (downloads) .. |docker_cogclassifier| image:: https://quay.io/repository/biocontainers/cogclassifier/status :target: https://quay.io/repository/biocontainers/cogclassifier .. _`cogclassifier/tags`: https://quay.io/repository/biocontainers/cogclassifier?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/cogclassifier/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/cogclassifier/README.html