:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'crisper_recognition_tool' .. highlight: bash crisper_recognition_tool ======================== .. conda:recipe:: crisper_recognition_tool :replaces_section_title: :noindex: A tool for automatic detection of clustered regularly interspaced palindromic repeats \(CRISPR\). :homepage: http://www.room220.com/crt/ :license: Public domain software :recipe: /`crisper_recognition_tool `_/`meta.yaml `_ .. conda:package:: crisper_recognition_tool |downloads_crisper_recognition_tool| |docker_crisper_recognition_tool| :versions: ``1.2-2``,  ``1.2-1``,  ``1.2-0`` :depends openjdk: ``>=6`` :depends python: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install crisper_recognition_tool and update with:: mamba update crisper_recognition_tool To create a new environment, run:: mamba create --name myenvname crisper_recognition_tool with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/crisper_recognition_tool: (see `crisper_recognition_tool/tags`_ for valid values for ````) .. |downloads_crisper_recognition_tool| image:: https://img.shields.io/conda/dn/bioconda/crisper_recognition_tool.svg?style=flat :target: https://anaconda.org/bioconda/crisper_recognition_tool :alt: (downloads) .. |docker_crisper_recognition_tool| image:: https://quay.io/repository/biocontainers/crisper_recognition_tool/status :target: https://quay.io/repository/biocontainers/crisper_recognition_tool .. _`crisper_recognition_tool/tags`: https://quay.io/repository/biocontainers/crisper_recognition_tool?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/crisper_recognition_tool/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/crisper_recognition_tool/README.html