:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'cromwell-tools' .. highlight: bash cromwell-tools ============== .. conda:recipe:: cromwell-tools :replaces_section_title: :noindex: Utilities for interacting with the Cromwell workflow engine :homepage: http://github.com/broadinstitute/cromwell-tools :documentation: https://cromwell-tools.readthedocs.io/en/stable/ :license: BSD / BSD :recipe: /`cromwell-tools `_/`meta.yaml `_ .. conda:package:: cromwell-tools |downloads_cromwell-tools| |docker_cromwell-tools| :versions: ``2.4.1-0``,  ``2.4.0-0``,  ``2.3.0-0``,  ``2.2.3-0``,  ``2.2.0-0``,  ``1.1.0-0``,  ``1.0.1-0`` :depends google-api-python-client: ``1.7.11.*`` :depends google-auth: ``>=1.6.1,<2`` :depends python: ``>=3.6`` :depends python-dateutil: ``2.8.0.*`` :depends requests: ``>=2.20.0,<3`` :depends setuptools_scm: ``>=3.1.0,<4`` :depends six: ``>=1.11.0`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install cromwell-tools and update with:: mamba update cromwell-tools To create a new environment, run:: mamba create --name myenvname cromwell-tools with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/cromwell-tools: (see `cromwell-tools/tags`_ for valid values for ````) .. |downloads_cromwell-tools| image:: https://img.shields.io/conda/dn/bioconda/cromwell-tools.svg?style=flat :target: https://anaconda.org/bioconda/cromwell-tools :alt: (downloads) .. |docker_cromwell-tools| image:: https://quay.io/repository/biocontainers/cromwell-tools/status :target: https://quay.io/repository/biocontainers/cromwell-tools .. _`cromwell-tools/tags`: https://quay.io/repository/biocontainers/cromwell-tools?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/cromwell-tools/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/cromwell-tools/README.html