:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'dadaist2-full' .. highlight: bash dadaist2-full ============= .. conda:recipe:: dadaist2-full :replaces_section_title: :noindex: Meta\-package for Dadaist2 with full R packages\, VSEARCH\, CD\-HIT and MultiQC :homepage: :license: The license for this meta-package is MIT; individual tools vary :recipe: /`dadaist2-full `_/`meta.yaml `_ .. conda:package:: dadaist2-full |downloads_dadaist2-full| |docker_dadaist2-full| :versions: ``2.0-0``,  ``1.1-0``,  ``1.0-0``,  ``0.7-1``,  ``0.7-0`` :depends cd-hit: :depends dadaist2: ``>=1.1`` :depends itsxpress: :depends multiqc: :depends r-ade4: :depends r-base: ``>=4`` :depends r-cluster: :depends r-corrplot: :depends r-fpc: :depends r-hmisc: :depends r-optparse: :depends r-phangorn: :depends rich: :depends vsearch: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install dadaist2-full and update with:: mamba update dadaist2-full To create a new environment, run:: mamba create --name myenvname dadaist2-full with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/dadaist2-full: (see `dadaist2-full/tags`_ for valid values for ````) .. |downloads_dadaist2-full| image:: https://img.shields.io/conda/dn/bioconda/dadaist2-full.svg?style=flat :target: https://anaconda.org/bioconda/dadaist2-full :alt: (downloads) .. |docker_dadaist2-full| image:: https://quay.io/repository/biocontainers/dadaist2-full/status :target: https://quay.io/repository/biocontainers/dadaist2-full .. _`dadaist2-full/tags`: https://quay.io/repository/biocontainers/dadaist2-full?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/dadaist2-full/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/dadaist2-full/README.html