:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'daligner' .. highlight: bash daligner ======== .. conda:recipe:: daligner :replaces_section_title: :noindex: DALIGNER\: Find all significant local alignments between reads :homepage: https://github.com/thegenemyers/DALIGNER :license: Custom :recipe: /`daligner `_/`meta.yaml `_ .. conda:package:: daligner |downloads_daligner| |docker_daligner| :versions: .. raw:: html
1.0.20230620-01.0.20200322-41.0.20200322-31.0.20200322-21.0.20200322-11.0.20200322-01.0-01.0p2-11.0p2-0 ``1.0.20230620-0``,  ``1.0.20200322-4``,  ``1.0.20200322-3``,  ``1.0.20200322-2``,  ``1.0.20200322-1``,  ``1.0.20200322-0``,  ``1.0-0``,  ``1.0p2-1``,  ``1.0p2-0``,  ``1.0p1-2``,  ``1.0p1-1``,  ``1.0p1-0`` .. raw:: html
:depends libgcc-ng: ``>=12`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install daligner and update with:: mamba update daligner To create a new environment, run:: mamba create --name myenvname daligner with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/daligner: (see `daligner/tags`_ for valid values for ````) .. |downloads_daligner| image:: https://img.shields.io/conda/dn/bioconda/daligner.svg?style=flat :target: https://anaconda.org/bioconda/daligner :alt: (downloads) .. |docker_daligner| image:: https://quay.io/repository/biocontainers/daligner/status :target: https://quay.io/repository/biocontainers/daligner .. _`daligner/tags`: https://quay.io/repository/biocontainers/daligner?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/daligner/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/daligner/README.html