:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'ddrage' .. highlight: bash ddrage ====== .. conda:recipe:: ddrage :replaces_section_title: :noindex: Simulator for ddRADseq \(double digest restriction site associated DNA sequencing\) datasets. Generates reads \(FASTQ format\) that can be analyzed and validated using a ground truth file \(YAML\). :homepage: https://bitbucket.org/genomeinformatics/rage :license: MIT / MIT License :recipe: /`ddrage `_/`meta.yaml `_ .. conda:package:: ddrage |downloads_ddrage| |docker_ddrage| :versions: .. raw:: html
1.7.1-01.6.3-11.6.3-01.6.1-01.5.2-01.5.1-01.4.0-11.4.0-01.3.1-0 ``1.7.1-0``,  ``1.6.3-1``,  ``1.6.3-0``,  ``1.6.1-0``,  ``1.5.2-0``,  ``1.5.1-0``,  ``1.4.0-1``,  ``1.4.0-0``,  ``1.3.1-0``,  ``1.3.0-0``,  ``1.2.2-0``,  ``1.1.4-0`` .. raw:: html
:depends dinopy: :depends matplotlib-base: :depends numba: :depends numpy: :depends python: ``>=3`` :depends pyyaml: :depends scipy: ``>=1.4.1`` :depends seaborn: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install ddrage and update with:: mamba update ddrage To create a new environment, run:: mamba create --name myenvname ddrage with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/ddrage: (see `ddrage/tags`_ for valid values for ````) .. |downloads_ddrage| image:: https://img.shields.io/conda/dn/bioconda/ddrage.svg?style=flat :target: https://anaconda.org/bioconda/ddrage :alt: (downloads) .. |docker_ddrage| image:: https://quay.io/repository/biocontainers/ddrage/status :target: https://quay.io/repository/biocontainers/ddrage .. _`ddrage/tags`: https://quay.io/repository/biocontainers/ddrage?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/ddrage/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/ddrage/README.html