:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'deepbgc' .. highlight: bash deepbgc ======= .. conda:recipe:: deepbgc :replaces_section_title: :noindex: DeepBGC \- Biosynthetic Gene Cluster detection and classification :homepage: https://github.com/Merck/DeepBGC :license: MIT / MIT :recipe: /`deepbgc `_/`meta.yaml `_ .. conda:package:: deepbgc |downloads_deepbgc| |docker_deepbgc| :versions: .. raw:: html
0.1.31-00.1.30-20.1.30-10.1.30-00.1.29-00.1.28-10.1.28-00.1.27-00.1.26-0 ``0.1.31-0``,  ``0.1.30-2``,  ``0.1.30-1``,  ``0.1.30-0``,  ``0.1.29-0``,  ``0.1.28-1``,  ``0.1.28-0``,  ``0.1.27-0``,  ``0.1.26-0``,  ``0.1.23-0``,  ``0.1.22-0``,  ``0.1.21-0``,  ``0.1.20-0``,  ``0.1.19-0``,  ``0.1.18-1``,  ``0.1.18-0``,  ``0.1.17-0``,  ``0.1.16-0``,  ``0.1.15-0``,  ``0.1.14-0``,  ``0.1.13-0``,  ``0.1.10-0``,  ``0.1.9-0``,  ``0.1.8-0``,  ``0.1.7-0``,  ``0.1.6-0``,  ``0.1.5-0``,  ``0.1.4-0``,  ``0.1.3-1``,  ``0.1.3-0`` .. raw:: html
:depends appdirs: ``>=1.4.3`` :depends biopython: ``>=1.78`` :depends hmmer: ``>=3.1b2`` :depends keras: ``2.2.4`` :depends matplotlib-base: ``2.2.3`` :depends numpy: ``1.16.1`` :depends pandas: ``0.24.1`` :depends prodigal: :depends protobuf: ``<=3.19.0`` :depends python: ``>=3.5`` :depends scikit-learn: ``0.21.3`` :depends scipy: ``1.2.0`` :depends tensorflow: ``>=1.12.0,<2.0.0`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install deepbgc and update with:: mamba update deepbgc To create a new environment, run:: mamba create --name myenvname deepbgc with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/deepbgc: (see `deepbgc/tags`_ for valid values for ````) .. |downloads_deepbgc| image:: https://img.shields.io/conda/dn/bioconda/deepbgc.svg?style=flat :target: https://anaconda.org/bioconda/deepbgc :alt: (downloads) .. |docker_deepbgc| image:: https://quay.io/repository/biocontainers/deepbgc/status :target: https://quay.io/repository/biocontainers/deepbgc .. _`deepbgc/tags`: https://quay.io/repository/biocontainers/deepbgc?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/deepbgc/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/deepbgc/README.html