:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'delly' .. highlight: bash delly ===== .. conda:recipe:: delly :replaces_section_title: :noindex: Structural variant discovery by integrated paired\-end and split\-read analysis :homepage: https://github.com/dellytools/delly :license: BSD / BSD-3-Clause :recipe: /`delly `_/`meta.yaml `_ :links: doi: :doi:`10.1093/bioinformatics/bts378`, biotools: :biotools:`Delly2` .. conda:package:: delly |downloads_delly| |docker_delly| :versions: .. raw:: html
1.2.6-01.1.8-01.1.7-01.1.6-21.1.6-11.1.6-01.1.5-11.1.5-01.1.3-1 ``1.2.6-0``,  ``1.1.8-0``,  ``1.1.7-0``,  ``1.1.6-2``,  ``1.1.6-1``,  ``1.1.6-0``,  ``1.1.5-1``,  ``1.1.5-0``,  ``1.1.3-1``,  ``1.1.3-0``,  ``1.0.3-4``,  ``1.0.3-3``,  ``1.0.3-2``,  ``1.0.3-1``,  ``1.0.3-0``,  ``0.9.1-4``,  ``0.9.1-3``,  ``0.9.1-2``,  ``0.9.1-1``,  ``0.9.1-0``,  ``0.8.7-1``,  ``0.8.7-0``,  ``0.8.6-0``,  ``0.8.5-0``,  ``0.8.3-1``,  ``0.8.3-0``,  ``0.8.2-1``,  ``0.8.2-0``,  ``0.8.1-3``,  ``0.8.1-2``,  ``0.8.1-1``,  ``0.8.1-0``,  ``0.7.9-4``,  ``0.7.8-4``,  ``0.7.8-3``,  ``0.7.8-2``,  ``0.7.8-1``,  ``0.7.8-0``,  ``0.7.7-1``,  ``0.7.6-0``,  ``0.7.2-1``,  ``0.7.2-0`` .. raw:: html
:depends boost-cpp: ``>=1.78.0,<1.78.1.0a0`` :depends bzip2: ``>=1.0.8,<2.0a0`` :depends htslib: ``>=1.19,<1.20.0a0`` :depends libgcc-ng: ``>=12`` :depends libstdcxx-ng: ``>=12`` :depends libzlib: ``>=1.2.13,<1.3.0a0`` :depends zlib: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install delly and update with:: mamba update delly To create a new environment, run:: mamba create --name myenvname delly with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/delly: (see `delly/tags`_ for valid values for ````) .. |downloads_delly| image:: https://img.shields.io/conda/dn/bioconda/delly.svg?style=flat :target: https://anaconda.org/bioconda/delly :alt: (downloads) .. |docker_delly| image:: https://quay.io/repository/biocontainers/delly/status :target: https://quay.io/repository/biocontainers/delly .. _`delly/tags`: https://quay.io/repository/biocontainers/delly?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/delly/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/delly/README.html