:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'diamond' .. highlight: bash diamond ======= .. conda:recipe:: diamond :replaces_section_title: :noindex: Accelerated BLAST compatible local sequence aligner :homepage: https://github.com/bbuchfink/diamond :documentation: https://github.com/bbuchfink/diamond/wiki :license: GPL3 / GPL-3.0-or-later :recipe: /`diamond `_/`meta.yaml `_ :links: biotools: :biotools:`Diamond`, doi: :doi:`10.1038/s41592-021-01101-x` .. conda:package:: diamond |downloads_diamond| |docker_diamond| :versions: .. raw:: html
2.1.9-02.1.8-02.1.7-12.1.7-02.1.6-22.1.6-12.1.6-02.1.4-12.1.4-0 ``2.1.9-0``,  ``2.1.8-0``,  ``2.1.7-1``,  ``2.1.7-0``,  ``2.1.6-2``,  ``2.1.6-1``,  ``2.1.6-0``,  ``2.1.4-1``,  ``2.1.4-0``,  ``2.1.3-0``,  ``2.1.2-0``,  ``2.0.15-1``,  ``2.0.15-0``,  ``2.0.14-1``,  ``2.0.14-0``,  ``2.0.13-0``,  ``2.0.12-0``,  ``2.0.11-0``,  ``2.0.10-0``,  ``2.0.9-0``,  ``2.0.8-1``,  ``2.0.8-0``,  ``2.0.7-0``,  ``2.0.6-0``,  ``2.0.5-0``,  ``2.0.4-0``,  ``2.0.2-0``,  ``2.0.1-0``,  ``2.0.0-0``,  ``0.9.36-0``,  ``0.9.35-0``,  ``0.9.34-0``,  ``0.9.32-0``,  ``0.9.30-0``,  ``0.9.29-0``,  ``0.9.28-0``,  ``0.9.26-0``,  ``0.9.25-0``,  ``0.9.24-1``,  ``0.9.24-0``,  ``0.9.22-0``,  ``0.9.21-1``,  ``0.9.19-5``,  ``0.9.19-4``,  ``0.9.19-3``,  ``0.9.19-2``,  ``0.9.19-1``,  ``0.9.14-5``,  ``0.9.14-4``,  ``0.9.14-3``,  ``0.9.14-2``,  ``0.9.14-1``,  ``0.9.14-0``,  ``0.9.10-5``,  ``0.9.10-4``,  ``0.9.10-3``,  ``0.9.10-2``,  ``0.9.10-1``,  ``0.9.10-0``,  ``0.8.36-7``,  ``0.8.36-6``,  ``0.8.36-5``,  ``0.8.36-4``,  ``0.8.36-3``,  ``0.8.36-2``,  ``0.8.36-1``,  ``0.8.36-0``,  ``0.8.31-5``,  ``0.8.31-4``,  ``0.8.31-3``,  ``0.8.31-2``,  ``0.8.31-1``,  ``0.8.31-0``,  ``0.8.30-5``,  ``0.8.30-4``,  ``0.8.30-3``,  ``0.8.30-2``,  ``0.8.30-1``,  ``0.8.30-0``,  ``0.8.29-6``,  ``0.8.29-5``,  ``0.8.29-4``,  ``0.8.29-3``,  ``0.8.29-2``,  ``0.8.29-1``,  ``0.8.29-0``,  ``0.8.28-5``,  ``0.8.28-4``,  ``0.8.28-3``,  ``0.8.28-2``,  ``0.8.28-1``,  ``0.8.28-0``,  ``0.8.27-6``,  ``0.8.27-5``,  ``0.8.27-4``,  ``0.8.27-3``,  ``0.8.27-2``,  ``0.8.27-1``,  ``0.8.27-0``,  ``0.8.26-5``,  ``0.8.26-4``,  ``0.8.26-3``,  ``0.8.26-2``,  ``0.8.26-1``,  ``0.8.26-0``,  ``0.8.24-4``,  ``0.8.24-3``,  ``0.8.24-2``,  ``0.8.24-1``,  ``0.8.24-0``,  ``0.8.22-7``,  ``0.8.22-6``,  ``0.8.22-5``,  ``0.8.22-4``,  ``0.8.22-3``,  ``0.8.22-2``,  ``0.8.22-1``,  ``0.8.9-1``,  ``0.7.12-0``,  ``0.7.10-1``,  ``0.7.10-0`` .. raw:: html
:depends blast: ``>=2.15.0,<2.16.0a0`` :depends libgcc-ng: ``>=12`` :depends libstdcxx-ng: ``>=12`` :depends libzlib: ``>=1.2.13,<1.3.0a0`` :depends zlib: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install diamond and update with:: mamba update diamond To create a new environment, run:: mamba create --name myenvname diamond with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/diamond: (see `diamond/tags`_ for valid values for ````) .. |downloads_diamond| image:: https://img.shields.io/conda/dn/bioconda/diamond.svg?style=flat :target: https://anaconda.org/bioconda/diamond :alt: (downloads) .. |docker_diamond| image:: https://quay.io/repository/biocontainers/diamond/status :target: https://quay.io/repository/biocontainers/diamond .. _`diamond/tags`: https://quay.io/repository/biocontainers/diamond?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/diamond/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/diamond/README.html