:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'dinf' .. highlight: bash dinf ==== .. conda:recipe:: dinf :replaces_section_title: :noindex: discriminator\-based inference for population genetics :homepage: https://github.com/RacimoLab/dinf :license: MIT :recipe: /`dinf `_/`meta.yaml `_ .. conda:package:: dinf |downloads_dinf| |docker_dinf| :versions: ``0.5.0-0``,  ``0.4.0-0``,  ``0.3.0-0``,  ``0.2.0-0`` :depends adjusttext: :depends cyvcf2: ``>=0.30.14`` :depends demes: ``>=0.2.1`` :depends demesdraw: :depends emcee: :depends flax: ``>=0.5.2`` :depends jax: :depends matplotlib-base: :depends msprime: ``>=1.0.4`` :depends multiprocess: :depends numpy: :depends optax: :depends python: ``>=3.8`` :depends rich: :depends scipy: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install dinf and update with:: mamba update dinf To create a new environment, run:: mamba create --name myenvname dinf with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/dinf: (see `dinf/tags`_ for valid values for ````) .. |downloads_dinf| image:: https://img.shields.io/conda/dn/bioconda/dinf.svg?style=flat :target: https://anaconda.org/bioconda/dinf :alt: (downloads) .. |docker_dinf| image:: https://quay.io/repository/biocontainers/dinf/status :target: https://quay.io/repository/biocontainers/dinf .. _`dinf/tags`: https://quay.io/repository/biocontainers/dinf?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/dinf/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/dinf/README.html