:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'dinopy' .. highlight: bash dinopy ====== .. conda:recipe:: dinopy :replaces_section_title: :noindex: DNA input and output library for Python and Cython. Includes reader and writer for FASTA and FASTQ files\, support for samtools faidx files\, and generators for solid and gapped q\-grams \(k\-mers\). :homepage: https://bitbucket.org/HenningTimm/dinopy :license: MIT License :recipe: /`dinopy `_/`meta.yaml `_ .. conda:package:: dinopy |downloads_dinopy| |docker_dinopy| :versions: .. raw:: html
2.2.1-52.2.1-32.2.1-22.2.1-02.2.0-32.2.0-22.2.0-12.2.0-02.1.0-0 ``2.2.1-5``,  ``2.2.1-3``,  ``2.2.1-2``,  ``2.2.1-0``,  ``2.2.0-3``,  ``2.2.0-2``,  ``2.2.0-1``,  ``2.2.0-0``,  ``2.1.0-0``,  ``2.0.3-0``,  ``2.0.2-0``,  ``2.0.1-1``,  ``2.0.1-0``,  ``2.0.0-1``,  ``2.0.0-0``,  ``1.2.1-0``,  ``1.2.0-0`` .. raw:: html
:depends libgcc-ng: ``>=12`` :depends libstdcxx-ng: ``>=12`` :depends numpy: ``1.21.*`` :depends numpy: ``>=1.21.6,<2.0a0`` :depends python: ``>=3.10,<3.11.0a0`` :depends python_abi: ``3.10.* *_cp310`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install dinopy and update with:: mamba update dinopy To create a new environment, run:: mamba create --name myenvname dinopy with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/dinopy: (see `dinopy/tags`_ for valid values for ````) .. |downloads_dinopy| image:: https://img.shields.io/conda/dn/bioconda/dinopy.svg?style=flat :target: https://anaconda.org/bioconda/dinopy :alt: (downloads) .. |docker_dinopy| image:: https://quay.io/repository/biocontainers/dinopy/status :target: https://quay.io/repository/biocontainers/dinopy .. _`dinopy/tags`: https://quay.io/repository/biocontainers/dinopy?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/dinopy/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/dinopy/README.html