:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'drep' .. highlight: bash drep ==== .. conda:recipe:: drep :replaces_section_title: :noindex: De\-replication of microbial genomes assembled from multiple samples :homepage: https://github.com/MrOlm/drep :documentation: https://drep.readthedocs.io/en/latest/ :license: MIT / MIT :recipe: /`drep `_/`meta.yaml `_ .. conda:package:: drep |downloads_drep| |docker_drep| :versions: .. raw:: html
3.5.0-03.4.5-03.4.4-03.4.3-03.4.2-03.4.1-03.4.0-03.3.1-03.3.0-0 ``3.5.0-0``,  ``3.4.5-0``,  ``3.4.4-0``,  ``3.4.3-0``,  ``3.4.2-0``,  ``3.4.1-0``,  ``3.4.0-0``,  ``3.3.1-0``,  ``3.3.0-0``,  ``3.2.2-0``,  ``3.2.1-0``,  ``3.2.0-0``,  ``3.1.1-0``,  ``3.1.0-0``,  ``3.0.1-0``,  ``3.0.0-2``,  ``3.0.0-1``,  ``3.0.0-0``,  ``2.6.2-0``,  ``2.6.1-0``,  ``2.6.0-0``,  ``2.5.4-0``,  ``2.5.3-0``,  ``2.5.2-0``,  ``2.5.1-0``,  ``2.5.0-0``,  ``2.4.2-0``,  ``2.4.1-0``,  ``2.4.0-1``,  ``2.4.0-0``,  ``2.3.2-1``,  ``2.3.2-0``,  ``2.2.3-1``,  ``2.2.3-0``,  ``2.0.5-2``,  ``2.0.5-0`` .. raw:: html
:depends checkm-genome: :depends fastani: :depends mash: :depends matplotlib-base: :depends mummer4: :depends numpy: :depends pandas: :depends prodigal: :depends python: ``>3`` :depends scikit-learn: :depends seaborn: :depends skani: :depends tqdm: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install drep and update with:: mamba update drep To create a new environment, run:: mamba create --name myenvname drep with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/drep: (see `drep/tags`_ for valid values for ````) .. |downloads_drep| image:: https://img.shields.io/conda/dn/bioconda/drep.svg?style=flat :target: https://anaconda.org/bioconda/drep :alt: (downloads) .. |docker_drep| image:: https://quay.io/repository/biocontainers/drep/status :target: https://quay.io/repository/biocontainers/drep .. _`drep/tags`: https://quay.io/repository/biocontainers/drep?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/drep/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/drep/README.html