:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'drep' .. highlight: bash drep ==== .. conda:recipe:: drep :replaces_section_title: :noindex: De\-replication of microbial genomes assembled from multiple samples :homepage: https://github.com/MrOlm/drep :license: MIT / MIT :recipe: /`drep `_/`meta.yaml `_ .. conda:package:: drep |downloads_drep| |docker_drep| :versions: .. raw:: html
3.3.1-03.3.0-03.2.2-03.2.1-03.2.0-03.1.1-03.1.0-03.0.1-03.0.0-2 ``3.3.1-0``,  ``3.3.0-0``,  ``3.2.2-0``,  ``3.2.1-0``,  ``3.2.0-0``,  ``3.1.1-0``,  ``3.1.0-0``,  ``3.0.1-0``,  ``3.0.0-2``,  ``3.0.0-1``,  ``3.0.0-0``,  ``2.6.2-0``,  ``2.6.1-0``,  ``2.6.0-0``,  ``2.5.4-0``,  ``2.5.3-0``,  ``2.5.2-0``,  ``2.5.1-0``,  ``2.5.0-0``,  ``2.4.2-0``,  ``2.4.1-0``,  ``2.4.0-1``,  ``2.4.0-0``,  ``2.3.2-1``,  ``2.3.2-0``,  ``2.2.3-1``,  ``2.2.3-0``,  ``2.0.5-2``,  ``2.0.5-0`` .. raw:: html
:depends biopython: :depends fastani: :depends mash: :depends matplotlib-base: :depends mummer4: :depends numpy: :depends pandas: :depends prodigal: :depends python: ``>3`` :depends scikit-learn: :depends seaborn: :requirements: .. rubric:: Installation With an activated Bioconda channel (see :ref:`set-up-channels`), install with:: conda install drep and update with:: conda update drep or use the docker container:: docker pull quay.io/biocontainers/drep: (see `drep/tags`_ for valid values for ````) .. |downloads_drep| image:: https://img.shields.io/conda/dn/bioconda/drep.svg?style=flat :target: https://anaconda.org/bioconda/drep :alt: (downloads) .. |docker_drep| image:: https://quay.io/repository/biocontainers/drep/status :target: https://quay.io/repository/biocontainers/drep .. _`drep/tags`: https://quay.io/repository/biocontainers/drep?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/drep/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/drep/README.html