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.. title:: Package Recipe 'dropletutils-scripts'
.. highlight: bash

dropletutils-scripts
====================

.. conda:recipe:: dropletutils-scripts
   :replaces_section_title:
   :noindex:

   CLI scripts for the DropletUtils package

   :homepage: https://github.com/ebi-gene-expression-group/dropletutils-scripts
   :license: GPL / Apache 2.0
   :recipe: /`dropletutils-scripts <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/dropletutils-scripts>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/dropletutils-scripts/meta.yaml>`_

   A set of wrappers for operations associated with Aaron Lun\'s
   DropletUtils  package. Functions in R packages are hard to call when
   building workflows outside of R\, so this package adds a set of simple
   wrappers with robust argument parsing. Intermediate steps are currently
   mainly serialized R objects\, but the ultimate objective is to have
   language\-agnostic intermediate formats allowing composite workflows using a
   variety of software packages.



.. conda:package:: dropletutils-scripts

   |downloads_dropletutils-scripts| |docker_dropletutils-scripts|

   :versions:
      
      

      ``0.0.5-1``,  ``0.0.5-0``,  ``0.0.4-1``,  ``0.0.4-0``,  ``0.0.3-0``,  ``0.0.2-1``,  ``0.0.1-1``,  ``0.0.1-0``

      

   
   :depends bioconductor-biobase: 
   :depends bioconductor-dropletutils: ``>=1.3,<1.5``
   :depends bioconductor-singlecellexperiment: 
   :depends openblas: 
   :depends r-optparse: 
   :depends r-workflowscriptscommon: 
   :requirements:

   .. rubric:: Installation

   With an activated Bioconda channel (see :ref:`set-up-channels`), install with::

      conda install dropletutils-scripts

   and update with::

      conda update dropletutils-scripts

   or use the docker container::

      docker pull quay.io/biocontainers/dropletutils-scripts:<tag>

   (see `dropletutils-scripts/tags`_ for valid values for ``<tag>``)


.. |downloads_dropletutils-scripts| image:: https://img.shields.io/conda/dn/bioconda/dropletutils-scripts.svg?style=flat
   :target: https://anaconda.org/bioconda/dropletutils-scripts
   :alt:   (downloads)
.. |docker_dropletutils-scripts| image:: https://quay.io/repository/biocontainers/dropletutils-scripts/status
   :target: https://quay.io/repository/biocontainers/dropletutils-scripts
.. _`dropletutils-scripts/tags`: https://quay.io/repository/biocontainers/dropletutils-scripts?tab=tags


.. raw:: html

    <script>
        var package = "dropletutils-scripts";
        var versions = ["0.0.5","0.0.5","0.0.4","0.0.4","0.0.3"];
    </script>






Download stats
-----------------

.. raw:: html
    :file: ../../templates/package_dashboard.html

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.. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat
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