:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'duplex-tools' .. highlight: bash duplex-tools ============ .. conda:recipe:: duplex-tools :replaces_section_title: :noindex: Duplex Tools contains a set of utilities for dealing with ONT Duplex sequencing data :homepage: https://github.com/nanoporetech/duplex-tools :license: MPL-2.0 :recipe: /`duplex-tools `_/`meta.yaml `_ .. conda:package:: duplex-tools |downloads_duplex-tools| |docker_duplex-tools| :versions: .. raw:: html
0.2.17-00.2.15-00.2.14-00.2.13-00.2.12-00.2.11-00.2.10-00.2.9-00.2.8-0 ``0.2.17-0``,  ``0.2.15-0``,  ``0.2.14-0``,  ``0.2.13-0``,  ``0.2.12-0``,  ``0.2.11-0``,  ``0.2.10-0``,  ``0.2.9-0``,  ``0.2.8-0``,  ``0.2.7-0`` .. raw:: html
:depends more-itertools: :depends natsort: :depends numpy: :depends pandas: :depends parasail-python: :depends pathlib: :depends pyfastx: :depends pysam: :depends python: :depends python-edlib: :depends tqdm: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install duplex-tools and update with:: mamba update duplex-tools To create a new environment, run:: mamba create --name myenvname duplex-tools with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/duplex-tools: (see `duplex-tools/tags`_ for valid values for ````) .. |downloads_duplex-tools| image:: https://img.shields.io/conda/dn/bioconda/duplex-tools.svg?style=flat :target: https://anaconda.org/bioconda/duplex-tools :alt: (downloads) .. |docker_duplex-tools| image:: https://quay.io/repository/biocontainers/duplex-tools/status :target: https://quay.io/repository/biocontainers/duplex-tools .. _`duplex-tools/tags`: https://quay.io/repository/biocontainers/duplex-tools?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/duplex-tools/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/duplex-tools/README.html