:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'eggnog-mapper' .. highlight: bash eggnog-mapper ============= .. conda:recipe:: eggnog-mapper :replaces_section_title: :noindex: Fast genome\-wide functional annotation through orthology assignment. :homepage: https://github.com/eggnogdb/eggnog-mapper :documentation: https://github.com/eggnogdb/eggnog-mapper/wiki :license: GPL / AGPL-3.0-only :recipe: /`eggnog-mapper `_/`meta.yaml `_ :links: doi: :doi:`10.1093/nar/gky1085`, usegalaxy-eu: :usegalaxy-eu:`eggnog_mapper` .. conda:package:: eggnog-mapper |downloads_eggnog-mapper| |docker_eggnog-mapper| :versions: .. raw:: html
2.1.12-02.1.11-02.1.10-02.1.9-02.1.8-02.1.7-02.1.6-02.1.5-02.1.3-0 ``2.1.12-0``,  ``2.1.11-0``,  ``2.1.10-0``,  ``2.1.9-0``,  ``2.1.8-0``,  ``2.1.7-0``,  ``2.1.6-0``,  ``2.1.5-0``,  ``2.1.3-0``,  ``2.1.2-0``,  ``2.0.1-1``,  ``2.0.1-0``,  ``2.0.0-0``,  ``1.0.3-3``,  ``1.0.3-2``,  ``1.0.3-1``,  ``1.0.3-0``,  ``1.0.2-0``,  ``1.0.1-0``,  ``1.0.0-0`` .. raw:: html
:depends biopython: ``>=1.76`` :depends diamond: ``>=2.0.11`` :depends easel: :depends hmmer: :depends mmseqs2: :depends prodigal: :depends psutil: ``>=5.7.0`` :depends python: ``>=3.7`` :depends wget: :depends xlsxwriter: ``>=1.4.3`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install eggnog-mapper and update with:: mamba update eggnog-mapper To create a new environment, run:: mamba create --name myenvname eggnog-mapper with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/eggnog-mapper: (see `eggnog-mapper/tags`_ for valid values for ````) .. |downloads_eggnog-mapper| image:: https://img.shields.io/conda/dn/bioconda/eggnog-mapper.svg?style=flat :target: https://anaconda.org/bioconda/eggnog-mapper :alt: (downloads) .. |docker_eggnog-mapper| image:: https://quay.io/repository/biocontainers/eggnog-mapper/status :target: https://quay.io/repository/biocontainers/eggnog-mapper .. _`eggnog-mapper/tags`: https://quay.io/repository/biocontainers/eggnog-mapper?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/eggnog-mapper/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/eggnog-mapper/README.html