:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'emblmygff3' .. highlight: bash emblmygff3 ========== .. conda:recipe:: emblmygff3 :replaces_section_title: :noindex: An efficient way to convert gff3 annotation files into EMBL format ready to submit. :homepage: https://github.com/NBISweden/EMBLmyGFF3 :license: GPL / GPLv3 :recipe: /`emblmygff3 `_/`meta.yaml `_ .. conda:package:: emblmygff3 |downloads_emblmygff3| |docker_emblmygff3| :versions: ``2.3-0``,  ``2.2-1``,  ``2.2-0``,  ``2.1-0``,  ``2-1``,  ``2-0``,  ``1.3-0`` :depends bcbio-gff: ``>=0.6.4`` :depends biopython: ``>=1.78`` :depends numpy: ``>=1.22`` :depends python: ``>=3.9.0`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install emblmygff3 and update with:: mamba update emblmygff3 To create a new environment, run:: mamba create --name myenvname emblmygff3 with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/emblmygff3: (see `emblmygff3/tags`_ for valid values for ````) .. |downloads_emblmygff3| image:: https://img.shields.io/conda/dn/bioconda/emblmygff3.svg?style=flat :target: https://anaconda.org/bioconda/emblmygff3 :alt: (downloads) .. |docker_emblmygff3| image:: https://quay.io/repository/biocontainers/emblmygff3/status :target: https://quay.io/repository/biocontainers/emblmygff3 .. _`emblmygff3/tags`: https://quay.io/repository/biocontainers/emblmygff3?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/emblmygff3/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/emblmygff3/README.html