:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'emu' .. highlight: bash emu === .. conda:recipe:: emu :replaces_section_title: :noindex: Emu is a relative abundance estimator for 16s genomic data. :homepage: https://gitlab.com/treangenlab/emu :license: MIT :recipe: /`emu `_/`meta.yaml `_ .. conda:package:: emu |downloads_emu| |docker_emu| :versions: .. raw:: html
3.4.5-03.4.4-13.4.4-03.4.3-03.4.2-03.4.1-03.4.0-03.3.1-13.3.1-0 ``3.4.5-0``,  ``3.4.4-1``,  ``3.4.4-0``,  ``3.4.3-0``,  ``3.4.2-0``,  ``3.4.1-0``,  ``3.4.0-0``,  ``3.3.1-1``,  ``3.3.1-0``,  ``3.3.0-0``,  ``3.2.0-0``,  ``3.1.0-0``,  ``3.0.0-0``,  ``2.0.1-2``,  ``2.0.1-1``,  ``2.0.1-0``,  ``2.0.0-0``,  ``1.0.3-0``,  ``1.0.2-0``,  ``1.0.1-1``,  ``1.0.1-0``,  ``1.0.0-1``,  ``1.0.0-0`` .. raw:: html
:depends bioawk: :depends biopython: :depends flatten-dict: :depends importlib-metadata: :depends minimap2: ``>=2.22`` :depends numpy: ``>=1.11`` :depends pandas: ``>=1.1.3`` :depends pysam: ``>=0.15`` :depends python: ``>=3.6`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install emu and update with:: mamba update emu To create a new environment, run:: mamba create --name myenvname emu with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/emu: (see `emu/tags`_ for valid values for ````) .. |downloads_emu| image:: https://img.shields.io/conda/dn/bioconda/emu.svg?style=flat :target: https://anaconda.org/bioconda/emu :alt: (downloads) .. |docker_emu| image:: https://quay.io/repository/biocontainers/emu/status :target: https://quay.io/repository/biocontainers/emu .. _`emu/tags`: https://quay.io/repository/biocontainers/emu?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/emu/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/emu/README.html