:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'ena-upload-cli'
.. highlight: bash

ena-upload-cli
==============

.. conda:recipe:: ena-upload-cli
   :replaces_section_title:
   :noindex:

   Command Line Interface to upload data to the European Nucleotide Archive

   :homepage: https://github.com/usegalaxy-eu/ena-upload-cli
   :license: MIT / MIT
   :recipe: /`ena-upload-cli <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/ena-upload-cli>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/ena-upload-cli/meta.yaml>`_

   


.. conda:package:: ena-upload-cli

   |downloads_ena-upload-cli| |docker_ena-upload-cli|

   :versions:
      
      
      .. raw:: html

         <details><summary><span class="truncated-version-list"><code>0.7.1-0</code>,  <code>0.7.0-0</code>,  <code>0.6.3-0</code>,  <code>0.6.2-0</code>,  <code>0.6.1-0</code>,  <code>0.6.0-1</code>,  <code>0.6.0-0</code>,  <code>0.5.3-0</code>,  <code>0.5.2-0</code>,  </span></summary>
      

      ``0.7.1-0``,  ``0.7.0-0``,  ``0.6.3-0``,  ``0.6.2-0``,  ``0.6.1-0``,  ``0.6.0-1``,  ``0.6.0-0``,  ``0.5.3-0``,  ``0.5.2-0``,  ``0.5.1-0``,  ``0.5.0-0``,  ``0.4.5-0``,  ``0.4.4-0``,  ``0.4.3-0``,  ``0.4.2-0``,  ``0.4.1-0``,  ``0.4.0-0``,  ``0.3.1-0``,  ``0.3.0-0``,  ``0.2.8-0``,  ``0.2.7-0``,  ``0.2.5-0``,  ``0.2.4-0``,  ``0.2.3-0``,  ``0.2.2-0``,  ``0.2.1-0``,  ``0.2.0-0``,  ``0.1.9-0``,  ``0.1.8-0``,  ``0.1.7-0``,  ``0.1.5-0``,  ``0.1.4-0``,  ``0.1.3-0``,  ``0.1.2-0``

      
      .. raw:: html

         </details>
      

   
   :depends genshi: ``0.7.*``
   :depends jsonschema: ``>=4.19.1``
   :depends lxml: ``>=4.9.3,<=5.0.0``
   :depends openpyxl: ``>=3.1.2,<=4.0.0``
   :depends pandas: ``>=2.0.3,<=3.0.0``
   :depends pytest: ``7.4.*``
   :depends python: ``>=3.7``
   :depends pyyaml: ``5.*``
   :depends requests: ``>=2.31.0,<=3.0.0``
   :requirements:

   .. rubric:: Installation

  You need a conda-compatible package manager
  (currently either `micromamba <https://mamba.readthedocs.io>`_, `mamba <https://mamba.readthedocs.io>`_, or `conda <https://docs.conda.io/projects/conda>`_)
  and the Bioconda channel already activated (see :ref:`set-up-channels`).

  While any of above package managers is fine, it is currently recommended to use either
  micromamba or mamba (see `here <https://mamba.readthedocs.io>`_ for installation instructions).
  We will show all commands using mamba below, but the arguments are the same for the two
  others.

  Given that you already have a conda environment in which you want to have this package, install with::

      mamba install ena-upload-cli

   and update with::

      mamba update ena-upload-cli

  To create a new environment, run::

      mamba create --name myenvname ena-upload-cli

  with ``myenvname`` being a reasonable name for the environment
  (see e.g. the `mamba docs <https://mamba.readthedocs.io>`_ for details and further options).

  Alternatively, use the docker container::

      docker pull quay.io/biocontainers/ena-upload-cli:<tag>

   (see `ena-upload-cli/tags`_ for valid values for ``<tag>``)


.. |downloads_ena-upload-cli| image:: https://img.shields.io/conda/dn/bioconda/ena-upload-cli.svg?style=flat
   :target: https://anaconda.org/bioconda/ena-upload-cli
   :alt:   (downloads)
.. |docker_ena-upload-cli| image:: https://quay.io/repository/biocontainers/ena-upload-cli/status
   :target: https://quay.io/repository/biocontainers/ena-upload-cli
.. _`ena-upload-cli/tags`: https://quay.io/repository/biocontainers/ena-upload-cli?tab=tags


.. raw:: html

    <script>
        var package = "ena-upload-cli";
        var versions = ["0.7.1","0.7.0","0.6.3","0.6.2","0.6.1"];
    </script>






Download stats
-----------------

.. raw:: html
    :file: ../../templates/package_dashboard.html

Link to this page
-----------------

Render an |install-with-bioconda| badge with the following MarkDown::

   [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/ena-upload-cli/README.html)

.. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat
   :target: http://bioconda.github.io/recipes/ena-upload-cli/README.html