:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'encode-blacklist' .. highlight: bash encode-blacklist ================ .. conda:recipe:: encode-blacklist :replaces_section_title: :noindex: The ENCODE Blacklist\: Identification of Problematic Regions of the Genome :homepage: https://github.com/Boyle-Lab/Blacklist :license: GPL3 :recipe: /`encode-blacklist `_/`meta.yaml `_ :links: doi: :doi:`10.7717/10.1038/s41598-019-45839-z` .. conda:package:: encode-blacklist |downloads_encode-blacklist| |docker_encode-blacklist| :versions: ``2.0-4``,  ``2.0-3``,  ``2.0-2``,  ``2.0-1``,  ``2.0-0`` :depends bamtools: ``>=2.5.1,<2.5.2.0a0`` :depends libgcc-ng: ``>=12`` :depends libstdcxx-ng: ``>=12`` :depends libzlib: ``>=1.2.13,<1.3.0a0`` :depends zlib: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install encode-blacklist and update with:: mamba update encode-blacklist To create a new environment, run:: mamba create --name myenvname encode-blacklist with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/encode-blacklist: (see `encode-blacklist/tags`_ for valid values for ````) .. |downloads_encode-blacklist| image:: https://img.shields.io/conda/dn/bioconda/encode-blacklist.svg?style=flat :target: https://anaconda.org/bioconda/encode-blacklist :alt: (downloads) .. |docker_encode-blacklist| image:: https://quay.io/repository/biocontainers/encode-blacklist/status :target: https://quay.io/repository/biocontainers/encode-blacklist .. _`encode-blacklist/tags`: https://quay.io/repository/biocontainers/encode-blacklist?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/encode-blacklist/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/encode-blacklist/README.html