:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'expam' .. highlight: bash expam ===== .. conda:recipe:: expam :replaces_section_title: :noindex: Metagenomic profiling using a reference phylogeny :homepage: https://github.com/seansolari/expam :documentation: https://expam.readthedocs.io/en/latest/ :license: BSD / BSD-3-Clause :recipe: /`expam `_/`meta.yaml `_ .. conda:package:: expam |downloads_expam| |docker_expam| :versions: .. raw:: html
1.2.2.5-01.2.2.4-01.2.2.3-01.2.2.1-01.2.2-01.2.0-21.2.0-11.2.0-01.1.3-0 ``1.2.2.5-0``,  ``1.2.2.4-0``,  ``1.2.2.3-0``,  ``1.2.2.1-0``,  ``1.2.2-0``,  ``1.2.0-2``,  ``1.2.0-1``,  ``1.2.0-0``,  ``1.1.3-0``,  ``1.1.2-0``,  ``1.1.1-0``,  ``1.1.0-0``,  ``1.0.5-0`` .. raw:: html
:depends libgcc-ng: ``>=12`` :depends matplotlib-base: :depends multiprocess: :depends numpy: ``>=1.22.0`` :depends numpy: ``>=1.26.3,<2.0a0`` :depends pandas: :depends psutil: :depends pytables: :depends python: ``>=3.10,<3.11.0a0`` :depends python_abi: ``3.10.* *_cp310`` :depends requests: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install expam and update with:: mamba update expam To create a new environment, run:: mamba create --name myenvname expam with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/expam: (see `expam/tags`_ for valid values for ````) .. |downloads_expam| image:: https://img.shields.io/conda/dn/bioconda/expam.svg?style=flat :target: https://anaconda.org/bioconda/expam :alt: (downloads) .. |docker_expam| image:: https://quay.io/repository/biocontainers/expam/status :target: https://quay.io/repository/biocontainers/expam .. _`expam/tags`: https://quay.io/repository/biocontainers/expam?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/expam/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/expam/README.html