:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'extract_fullseq' .. highlight: bash extract_fullseq =============== .. conda:recipe:: extract_fullseq :replaces_section_title: :noindex: extract\_fullseq is part of BMTagger aka Best Match Tagger\, for removing human reads from metagenomics datasets :homepage: ftp://ftp.ncbi.nlm.nih.gov/pub/agarwala/bmtagger/ :license: Public Domain :recipe: /`extract_fullseq `_/`meta.yaml `_ .. conda:package:: extract_fullseq |downloads_extract_fullseq| |docker_extract_fullseq| :versions: ``3.101-4``,  ``3.101-3``,  ``3.101-2``,  ``3.101-1`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install extract_fullseq and update with:: mamba update extract_fullseq To create a new environment, run:: mamba create --name myenvname extract_fullseq with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/extract_fullseq: (see `extract_fullseq/tags`_ for valid values for ````) .. |downloads_extract_fullseq| image:: https://img.shields.io/conda/dn/bioconda/extract_fullseq.svg?style=flat :target: https://anaconda.org/bioconda/extract_fullseq :alt: (downloads) .. |docker_extract_fullseq| image:: https://quay.io/repository/biocontainers/extract_fullseq/status :target: https://quay.io/repository/biocontainers/extract_fullseq .. _`extract_fullseq/tags`: https://quay.io/repository/biocontainers/extract_fullseq?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/extract_fullseq/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/extract_fullseq/README.html