:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'famseq' .. highlight: bash famseq ====== .. conda:recipe:: famseq :replaces_section_title: :noindex: Peng G\, Fan Y\, Palculict TB\, Shen P\, Ruteshouser EC\, Chi A\, Davis RW\, Huff V\, Scharfe C\, Wang W. Rare variant detection using family\-based sequencing analysis. Proceedings of the National Academy of Sciences. 2013 Mar 5\;110\(10\)\:3985\-90 :homepage: http://bioinformatics.mdanderson.org/main/FamSeq :license: GPL-3 :recipe: /`famseq `_/`meta.yaml `_ .. conda:package:: famseq |downloads_famseq| |docker_famseq| :versions: ``1.0.3-6``,  ``1.0.3-5``,  ``1.0.3-4``,  ``1.0.3-3``,  ``1.0.3-2``,  ``1.0.3-1``,  ``1.0.3-0`` :depends libgcc-ng: ``>=12`` :depends libstdcxx-ng: ``>=12`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install famseq and update with:: mamba update famseq To create a new environment, run:: mamba create --name myenvname famseq with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/famseq: (see `famseq/tags`_ for valid values for ````) .. |downloads_famseq| image:: https://img.shields.io/conda/dn/bioconda/famseq.svg?style=flat :target: https://anaconda.org/bioconda/famseq :alt: (downloads) .. |docker_famseq| image:: https://quay.io/repository/biocontainers/famseq/status :target: https://quay.io/repository/biocontainers/famseq .. _`famseq/tags`: https://quay.io/repository/biocontainers/famseq?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/famseq/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/famseq/README.html