:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'fast5' .. highlight: bash fast5 ===== .. conda:recipe:: fast5 :replaces_section_title: :noindex: A C\+\+ header\-only library for reading Oxford Nanopore Fast5 files. :homepage: https://github.com/mateidavid/fast5 :license: MIT :recipe: /`fast5 `_/`meta.yaml `_ .. conda:package:: fast5 |downloads_fast5| |docker_fast5| :versions: .. raw:: html
0.6.5-30.6.5-20.6.5-10.6.5-00.6.4-00.6.3.p1-00.6.2-00.6.2.p1-30.6.2.p1-2 ``0.6.5-3``,  ``0.6.5-2``,  ``0.6.5-1``,  ``0.6.5-0``,  ``0.6.4-0``,  ``0.6.3.p1-0``,  ``0.6.2-0``,  ``0.6.2.p1-3``,  ``0.6.2.p1-2``,  ``0.6.2.p1-1``,  ``0.6.2.p1-0``,  ``0.6.1-0``,  ``0.5.10a-0``,  ``0.5.9-0``,  ``0.5.8-0``,  ``0.5.6-0``,  ``0.2.0-0`` .. raw:: html
:depends hdf5: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install fast5 and update with:: mamba update fast5 To create a new environment, run:: mamba create --name myenvname fast5 with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/fast5: (see `fast5/tags`_ for valid values for ````) .. |downloads_fast5| image:: https://img.shields.io/conda/dn/bioconda/fast5.svg?style=flat :target: https://anaconda.org/bioconda/fast5 :alt: (downloads) .. |docker_fast5| image:: https://quay.io/repository/biocontainers/fast5/status :target: https://quay.io/repository/biocontainers/fast5 .. _`fast5/tags`: https://quay.io/repository/biocontainers/fast5?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/fast5/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/fast5/README.html