:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'fastp' .. highlight: bash fastp ===== .. conda:recipe:: fastp :replaces_section_title: :noindex: A ultra\-fast FASTQ preprocessor with full features \(QC\/adapters\/trimming\/filtering\/splitting...\) :homepage: https://github.com/OpenGene/fastp :license: MIT / MIT :recipe: /`fastp `_/`meta.yaml `_ .. conda:package:: fastp |downloads_fastp| |docker_fastp| :versions: .. raw:: html
0.23.4-30.23.4-20.23.4-10.23.4-00.23.3-00.23.2-50.23.2-40.23.2-30.23.2-2 ``0.23.4-3``,  ``0.23.4-2``,  ``0.23.4-1``,  ``0.23.4-0``,  ``0.23.3-0``,  ``0.23.2-5``,  ``0.23.2-4``,  ``0.23.2-3``,  ``0.23.2-2``,  ``0.23.2-1``,  ``0.23.2-0``,  ``0.23.1-0``,  ``0.23.0-0``,  ``0.22.0-0``,  ``0.20.1-1``,  ``0.20.1-0``,  ``0.20.0-0``,  ``0.19.7-0``,  ``0.19.6-0``,  ``0.19.5-0``,  ``0.19.4-0``,  ``0.19.3-0``,  ``0.18.0-0``,  ``0.17.1-0``,  ``0.17.0-0``,  ``0.14.1-0``,  ``0.13.1-0``,  ``0.12.5-0``,  ``0.12.4-0``,  ``0.12.3-0``,  ``0.12.2-1``,  ``0.12.2-0`` .. raw:: html
:depends isa-l: :depends libdeflate: ``>=1.18,<1.19.0a0`` :depends libgcc-ng: ``>=12`` :depends libstdcxx-ng: ``>=12`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install fastp and update with:: mamba update fastp To create a new environment, run:: mamba create --name myenvname fastp with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/fastp: (see `fastp/tags`_ for valid values for ````) .. |downloads_fastp| image:: https://img.shields.io/conda/dn/bioconda/fastp.svg?style=flat :target: https://anaconda.org/bioconda/fastp :alt: (downloads) .. |docker_fastp| image:: https://quay.io/repository/biocontainers/fastp/status :target: https://quay.io/repository/biocontainers/fastp .. _`fastp/tags`: https://quay.io/repository/biocontainers/fastp?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/fastp/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/fastp/README.html