:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'fasttree' .. highlight: bash fasttree ======== .. conda:recipe:: fasttree :replaces_section_title: :noindex: FastTree infers approximately\-maximum\-likelihood phylogenetic trees from alignments of nucleotide or protein sequences :homepage: http://www.microbesonline.org/fasttree/ :license: GPL / GPL-2 :recipe: /`fasttree `_/`meta.yaml `_ :links: biotools: :biotools:`fasttree`, doi: :doi:`10.1093/molbev/msp077` .. conda:package:: fasttree |downloads_fasttree| |docker_fasttree| :versions: .. raw:: html
2.1.11-32.1.11-22.1.11-12.1.11-02.1.10-62.1.10-52.1.10-42.1.10-32.1.10-2 ``2.1.11-3``,  ``2.1.11-2``,  ``2.1.11-1``,  ``2.1.11-0``,  ``2.1.10-6``,  ``2.1.10-5``,  ``2.1.10-4``,  ``2.1.10-3``,  ``2.1.10-2``,  ``2.1.10-0``,  ``2.1.9-2``,  ``2.1.9-1``,  ``2.1.9-0``,  ``2.1.8-8``,  ``2.1.8-7``,  ``2.1.8-6``,  ``2.1.8-5``,  ``2.1.8-4``,  ``2.1.8-2``,  ``2.1.8-1``,  ``2.1.3-6``,  ``2.1.3-5``,  ``2.1.3-4``,  ``2.1.3-3``,  ``2.1.3-2``,  ``2.1.3-0`` .. raw:: html
:depends _openmp_mutex: ``>=4.5`` :depends libgcc-ng: ``>=12`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install fasttree and update with:: mamba update fasttree To create a new environment, run:: mamba create --name myenvname fasttree with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/fasttree: (see `fasttree/tags`_ for valid values for ````) .. |downloads_fasttree| image:: https://img.shields.io/conda/dn/bioconda/fasttree.svg?style=flat :target: https://anaconda.org/bioconda/fasttree :alt: (downloads) .. |docker_fasttree| image:: https://quay.io/repository/biocontainers/fasttree/status :target: https://quay.io/repository/biocontainers/fasttree .. _`fasttree/tags`: https://quay.io/repository/biocontainers/fasttree?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/fasttree/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/fasttree/README.html