:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'fegenie' .. highlight: bash fegenie ======= .. conda:recipe:: fegenie :replaces_section_title: :noindex: HMM\-based identification and categorization of iron genes and iron gene operons in genomes and metagenomes. :homepage: https://github.com/Arkadiy-Garber/FeGenie :license: AGPL / AGPL-3.0 :recipe: /`fegenie `_/`meta.yaml `_ :links: doi: :doi:`10.3389/fmicb.2020.00037` .. conda:package:: fegenie |downloads_fegenie| |docker_fegenie| :versions: ``1.2-3``,  ``1.2-2``,  ``1.2-1``,  ``1.2-0``,  ``1.1-2``,  ``1.1-1``,  ``1.1-0``,  ``1.0-0`` :depends blast: :depends diamond: :depends hmmer: :depends metabat2: :depends prodigal: :depends python: ``>=3.7`` :depends r-argparse: :depends r-base: ``4.0.*`` :depends r-broom: :depends r-ggdendro: :depends r-ggplot2: :depends r-ggpubr: :depends r-gridbase: :depends r-pvclust: :depends r-reshape: :depends r-reshape2: :depends r-stringi: :depends r-tidyverse: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install fegenie and update with:: mamba update fegenie To create a new environment, run:: mamba create --name myenvname fegenie with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/fegenie: (see `fegenie/tags`_ for valid values for ````) .. |downloads_fegenie| image:: https://img.shields.io/conda/dn/bioconda/fegenie.svg?style=flat :target: https://anaconda.org/bioconda/fegenie :alt: (downloads) .. |docker_fegenie| image:: https://quay.io/repository/biocontainers/fegenie/status :target: https://quay.io/repository/biocontainers/fegenie .. _`fegenie/tags`: https://quay.io/repository/biocontainers/fegenie?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/fegenie/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/fegenie/README.html