:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'flash'
.. highlight: bash

flash
=====

.. conda:recipe:: flash
   :replaces_section_title:

   Merge mates from fragments that are shorter than twice the read length

   :homepage: https://ccb.jhu.edu/software/FLASH/
   :license: GPLv3+
   :recipe: /`flash <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/flash>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/flash/meta.yaml>`_
   :links: biotools: :biotools:`flash`

   


.. conda:package:: flash

   |downloads_flash| |docker_flash|

   :versions: 1.2.11-4, 1.2.11-3, 1.2.11-2, 1.2.11-1, 1.2.11-0
   
   :depends libgcc-ng: >=7.3.0
   :depends zlib: >=1.2.11,<1.3.0a0
   :requirements:

   .. rubric:: Installation

   With an activated Bioconda channel (see :ref:`set-up-channels`), install with::

      conda install flash

   and update with::

      conda update flash

   or use the docker container::

      docker pull quay.io/biocontainers/flash:<tag>

   (see `flash/tags`_ for valid values for ``<tag>``)


.. |downloads_flash| image:: https://img.shields.io/conda/dn/bioconda/flash.svg?style=flat
   :target: https://anaconda.org/bioconda/flash
   :alt:   (downloads)
.. |docker_flash| image:: https://quay.io/repository/biocontainers/flash/status
   :target: https://quay.io/repository/biocontainers/flash
.. _`flash/tags`: https://quay.io/repository/biocontainers/flash?tab=tags







Link to this page
-----------------

Render an |install-with-bioconda| badge with the following MarkDown::

   [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/flash/README.html)

.. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat
   :target: http://bioconda.github.io/recipes/flash/README.html