:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'flowcraft' .. highlight: bash flowcraft ========= .. conda:recipe:: flowcraft :replaces_section_title: :noindex: A Nextflow pipeline assembler for genomics. Pick your modules. Assemble them. Run the pipeline. :homepage: https://github.com/assemblerflow/flowcraft :documentation: http://assemblerflow.readthedocs.io/en/latest/ :developer docs: http://assemblerflow.readthedocs.io/en/latest/ :license: GPL3 / GPL3 :recipe: /`flowcraft `_/`meta.yaml `_ .. conda:package:: flowcraft |downloads_flowcraft| |docker_flowcraft| :versions: .. raw:: html
1.4.1-21.4.1-11.4.0-11.4.0-01.3.1-11.3.0-11.2.2-11.2.1-11.2.0.post1-1 ``1.4.1-2``,  ``1.4.1-1``,  ``1.4.0-1``,  ``1.4.0-0``,  ``1.3.1-1``,  ``1.3.0-1``,  ``1.2.2-1``,  ``1.2.1-1``,  ``1.2.0.post1-1``,  ``1.2.0.post1-0``,  ``1.2.0-0`` .. raw:: html
:depends jinja2: :depends nextflow: ``>=0.28`` :depends pympler: :depends python: ``>=3`` :depends python-dateutil: :depends requests: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install flowcraft and update with:: mamba update flowcraft To create a new environment, run:: mamba create --name myenvname flowcraft with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/flowcraft: (see `flowcraft/tags`_ for valid values for ````) .. |downloads_flowcraft| image:: https://img.shields.io/conda/dn/bioconda/flowcraft.svg?style=flat :target: https://anaconda.org/bioconda/flowcraft :alt: (downloads) .. |docker_flowcraft| image:: https://quay.io/repository/biocontainers/flowcraft/status :target: https://quay.io/repository/biocontainers/flowcraft .. _`flowcraft/tags`: https://quay.io/repository/biocontainers/flowcraft?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/flowcraft/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/flowcraft/README.html