:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'flux-simulator' .. highlight: bash flux-simulator ============== .. conda:recipe:: flux-simulator :replaces_section_title: :noindex: Tool for modeling RNA\-Seq experiments in silico :homepage: http://sammeth.net/confluence/display/SIM/Home :license: BSD :recipe: /`flux-simulator `_/`meta.yaml `_ .. conda:package:: flux-simulator |downloads_flux-simulator| |docker_flux-simulator| :versions: ``1.2.1-3``,  ``1.2.1-2``,  ``1.2.1-1``,  ``1.2.1-0`` :depends openjdk: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install flux-simulator and update with:: mamba update flux-simulator To create a new environment, run:: mamba create --name myenvname flux-simulator with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/flux-simulator: (see `flux-simulator/tags`_ for valid values for ````) .. |downloads_flux-simulator| image:: https://img.shields.io/conda/dn/bioconda/flux-simulator.svg?style=flat :target: https://anaconda.org/bioconda/flux-simulator :alt: (downloads) .. |docker_flux-simulator| image:: https://quay.io/repository/biocontainers/flux-simulator/status :target: https://quay.io/repository/biocontainers/flux-simulator .. _`flux-simulator/tags`: https://quay.io/repository/biocontainers/flux-simulator?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/flux-simulator/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/flux-simulator/README.html