:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'flye' .. highlight: bash flye ==== .. conda:recipe:: flye :replaces_section_title: :noindex: Fast and accurate de novo assembler for single molecule sequencing reads :homepage: https://github.com/fenderglass/Flye/ :license: BSD-3-Clause :recipe: /`flye `_/`meta.yaml `_ .. conda:package:: flye |downloads_flye| |docker_flye| :versions: .. raw:: html
2.9.3-02.9.2-22.9.2-12.9.2-02.9.1-02.9-12.9-02.8.3-12.8.3-0 ``2.9.3-0``,  ``2.9.2-2``,  ``2.9.2-1``,  ``2.9.2-0``,  ``2.9.1-0``,  ``2.9-1``,  ``2.9-0``,  ``2.8.3-1``,  ``2.8.3-0``,  ``2.8.2-0``,  ``2.8.1-1``,  ``2.8.1-0``,  ``2.8-0``,  ``2.7.1-2``,  ``2.7.1-1``,  ``2.7.1-0``,  ``2.7-0``,  ``2.6-0``,  ``2.5-0``,  ``2.4.2-0``,  ``2.4.1-0``,  ``2.4-0``,  ``2.3.7-0``,  ``2.3.6-3``,  ``2.3.5-3``,  ``2.3.4-2``,  ``2.3.4-0``,  ``2.3.3-0``,  ``2.3.2-0``,  ``2.3.1-0``,  ``2.3-0`` .. raw:: html
:depends libgcc-ng: ``>=12`` :depends libstdcxx-ng: ``>=12`` :depends libzlib: ``>=1.2.13,<1.3.0a0`` :depends python: ``>=3.10,<3.11.0a0`` :depends python_abi: ``3.10.* *_cp310`` :depends setuptools: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install flye and update with:: mamba update flye To create a new environment, run:: mamba create --name myenvname flye with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/flye: (see `flye/tags`_ for valid values for ````) .. |downloads_flye| image:: https://img.shields.io/conda/dn/bioconda/flye.svg?style=flat :target: https://anaconda.org/bioconda/flye :alt: (downloads) .. |docker_flye| image:: https://quay.io/repository/biocontainers/flye/status :target: https://quay.io/repository/biocontainers/flye .. _`flye/tags`: https://quay.io/repository/biocontainers/flye?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/flye/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/flye/README.html