:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'fusion-inspector' .. highlight: bash fusion-inspector ================ .. conda:recipe:: fusion-inspector :replaces_section_title: :noindex: FusionInspector is a component of the Trinity Cancer Transcriptome Analysis Toolkit \(CTAT\). FusionInspector assists in fusion transcript discovery by performing a supervised analysis of fusion predictions\, attempting to recover and re\-score evidence for such predictions. \- https\:\/\/github.com\/FusionInspector\/FusionInspector\/wiki :homepage: https://github.com/FusionInspector/FusionInspector :license: BSD-3-Clause :recipe: /`fusion-inspector `_/`meta.yaml `_ .. conda:package:: fusion-inspector |downloads_fusion-inspector| |docker_fusion-inspector| :versions: ``2.8.0-0``,  ``2.2.1-0``,  ``1.3.1-1``,  ``1.3.1-0``,  ``1.2.0-0``,  ``1.1.0-2``,  ``1.1.0-1``,  ``1.1.0-0`` :depends bzip2: :depends gmap: ``>=2017.11.15`` :depends htslib: ``>=1.18,<1.20.0a0`` :depends perl: :depends perl-db-file: :depends perl-set-intervaltree: :depends perl-uri: :depends python: ``>=3`` :depends requests: ``>=2.19.1`` :depends samtools: ``>=1.3`` :depends star: ``>=2.6.1b`` :depends trinity: ``>=2.4`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install fusion-inspector and update with:: mamba update fusion-inspector To create a new environment, run:: mamba create --name myenvname fusion-inspector with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/fusion-inspector: (see `fusion-inspector/tags`_ for valid values for ````) .. |downloads_fusion-inspector| image:: https://img.shields.io/conda/dn/bioconda/fusion-inspector.svg?style=flat :target: https://anaconda.org/bioconda/fusion-inspector :alt: (downloads) .. |docker_fusion-inspector| image:: https://quay.io/repository/biocontainers/fusion-inspector/status :target: https://quay.io/repository/biocontainers/fusion-inspector .. _`fusion-inspector/tags`: https://quay.io/repository/biocontainers/fusion-inspector?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/fusion-inspector/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/fusion-inspector/README.html