:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'gait-gm' .. highlight: bash gait-gm ======= .. conda:recipe:: gait-gm :replaces_section_title: :noindex: GAIT\-GM \- Modeling Metabolites as a function of gene expression :homepage: https://github.com/secimTools/gait-gm :license: MIT / MIT License :recipe: /`gait-gm `_/`meta.yaml `_ Modeling Metabolites as a function of gene expression .. conda:package:: gait-gm |downloads_gait-gm| |docker_gait-gm| :versions: ``21.7.22-0``,  ``21.6.10-0`` :depends mygene: :depends python: ``>=3.7`` :depends r-base: :depends r-caret: :depends r-mixomics: :depends secimtools: ``>=21.6.3`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install gait-gm and update with:: mamba update gait-gm To create a new environment, run:: mamba create --name myenvname gait-gm with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/gait-gm: (see `gait-gm/tags`_ for valid values for ````) .. |downloads_gait-gm| image:: https://img.shields.io/conda/dn/bioconda/gait-gm.svg?style=flat :target: https://anaconda.org/bioconda/gait-gm :alt: (downloads) .. |docker_gait-gm| image:: https://quay.io/repository/biocontainers/gait-gm/status :target: https://quay.io/repository/biocontainers/gait-gm .. _`gait-gm/tags`: https://quay.io/repository/biocontainers/gait-gm?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/gait-gm/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/gait-gm/README.html