:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'gbkviz' .. highlight: bash gbkviz ====== .. conda:recipe:: gbkviz :replaces_section_title: :noindex: Simple web application to visualize and compare genomes in Genbank files :homepage: https://github.com/moshi4/GBKviz/ :license: MIT :recipe: /`gbkviz `_/`meta.yaml `_ .. conda:package:: gbkviz |downloads_gbkviz| |docker_gbkviz| :versions: ``1.2.0-0``,  ``1.1.5-0`` :depends biopython: ``>=1.79,<2.0`` :depends mummer4: ``>=4.0.0rc1`` :depends python: ``>=3.7,<4.0`` :depends reportlab: ``>=3.5.68,<4.0.0`` :depends streamlit: ``1.8.1`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install gbkviz and update with:: mamba update gbkviz To create a new environment, run:: mamba create --name myenvname gbkviz with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/gbkviz: (see `gbkviz/tags`_ for valid values for ````) .. |downloads_gbkviz| image:: https://img.shields.io/conda/dn/bioconda/gbkviz.svg?style=flat :target: https://anaconda.org/bioconda/gbkviz :alt: (downloads) .. |docker_gbkviz| image:: https://quay.io/repository/biocontainers/gbkviz/status :target: https://quay.io/repository/biocontainers/gbkviz .. _`gbkviz/tags`: https://quay.io/repository/biocontainers/gbkviz?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/gbkviz/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/gbkviz/README.html