:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'gcta' .. highlight: bash gcta ==== .. conda:recipe:: gcta :replaces_section_title: :noindex: GCTA \(Genome\-wide Complex Trait Analysis\) estimates the proportion of phenotypic variance explained by all genome\-wide SNPs for complex traits. :homepage: https://yanglab.westlake.edu.cn/software/gcta :license: GPL-3.0-only :recipe: /`gcta `_/`meta.yaml `_ :links: biotools: :biotools:`gcta`, doi: :doi:`10.1016/j.ajhg.2010.11.011` .. conda:package:: gcta |downloads_gcta| |docker_gcta| :versions: ``1.94.1-0``,  ``1.93.2beta-1``,  ``1.93.2beta-0`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install gcta and update with:: mamba update gcta To create a new environment, run:: mamba create --name myenvname gcta with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/gcta: (see `gcta/tags`_ for valid values for ````) .. |downloads_gcta| image:: https://img.shields.io/conda/dn/bioconda/gcta.svg?style=flat :target: https://anaconda.org/bioconda/gcta :alt: (downloads) .. |docker_gcta| image:: https://quay.io/repository/biocontainers/gcta/status :target: https://quay.io/repository/biocontainers/gcta .. _`gcta/tags`: https://quay.io/repository/biocontainers/gcta?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/gcta/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/gcta/README.html