:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'gdc-client' .. highlight: bash gdc-client ========== .. conda:recipe:: gdc-client :replaces_section_title: :noindex: GDC Data Transfer Tool :homepage: https://gdc.cancer.gov/access-data/gdc-data-transfer-tool :license: Apache v2 :recipe: /`gdc-client `_/`meta.yaml `_ .. conda:package:: gdc-client |downloads_gdc-client| |docker_gdc-client| :versions: ``1.6.1-0``,  ``1.6.0-0``,  ``1.5.0-0``,  ``1.4.0-0``,  ``1.3.0-3``,  ``1.3.0-1``,  ``1.3.0-0`` :depends cryptography: ``>=2.8,<2.9`` :depends intervaltree: ``>=3.0.2`` :depends jsonschema: ``>=2.6`` :depends lxml: ``>=4.4.2`` :depends ndg-httpsclient: ``>=0.5.0,<1`` :depends progressbar2: ``>=3.43.1`` :depends pyasn1: ``>=0.4.3,<1`` :depends pyopenssl: ``>=18,<19`` :depends python: ``>=3.5`` :depends pyyaml: ``>=3.13,<4`` :depends requests: ``>=2.22.0`` :depends termcolor: ``>=1.1.0`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install gdc-client and update with:: mamba update gdc-client To create a new environment, run:: mamba create --name myenvname gdc-client with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/gdc-client: (see `gdc-client/tags`_ for valid values for ````) .. |downloads_gdc-client| image:: https://img.shields.io/conda/dn/bioconda/gdc-client.svg?style=flat :target: https://anaconda.org/bioconda/gdc-client :alt: (downloads) .. |docker_gdc-client| image:: https://quay.io/repository/biocontainers/gdc-client/status :target: https://quay.io/repository/biocontainers/gdc-client .. _`gdc-client/tags`: https://quay.io/repository/biocontainers/gdc-client?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/gdc-client/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/gdc-client/README.html