:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'gffread' .. highlight: bash gffread ======= .. conda:recipe:: gffread :replaces_section_title: :noindex: GFF\/GTF utility providing format conversions\, region filtering\, FASTA sequence extraction and more. :homepage: http://ccb.jhu.edu/software/stringtie/gff.shtml :developer docs: https://github.com/gpertea/gffread :license: MIT :recipe: /`gffread `_/`meta.yaml `_ :links: biotools: :biotools:`gffread` .. conda:package:: gffread |downloads_gffread| |docker_gffread| :versions: .. raw:: html
0.12.7-40.12.7-30.12.7-20.12.7-10.12.7-00.12.1-10.12.1-00.11.7-00.11.6-0 ``0.12.7-4``,  ``0.12.7-3``,  ``0.12.7-2``,  ``0.12.7-1``,  ``0.12.7-0``,  ``0.12.1-1``,  ``0.12.1-0``,  ``0.11.7-0``,  ``0.11.6-0``,  ``0.11.4-0``,  ``0.9.12-0``,  ``0.9.9-1``,  ``0.9.9-0``,  ``0.9.8-0`` .. raw:: html
:depends libgcc-ng: ``>=12`` :depends libstdcxx-ng: ``>=12`` :depends libzlib: ``>=1.2.13,<1.3.0a0`` :depends zlib: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install gffread and update with:: mamba update gffread To create a new environment, run:: mamba create --name myenvname gffread with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/gffread: (see `gffread/tags`_ for valid values for ````) .. |downloads_gffread| image:: https://img.shields.io/conda/dn/bioconda/gffread.svg?style=flat :target: https://anaconda.org/bioconda/gffread :alt: (downloads) .. |docker_gffread| image:: https://quay.io/repository/biocontainers/gffread/status :target: https://quay.io/repository/biocontainers/gffread .. _`gffread/tags`: https://quay.io/repository/biocontainers/gffread?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/gffread/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/gffread/README.html