:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'gfold' .. highlight: bash gfold ===== .. conda:recipe:: gfold :replaces_section_title: :noindex: Find differentially expressed genes from RNA\-seq data with few replicates using generalized fold changes. :homepage: http://compbio.tongji.edu.cn/~fengjx/GFOLD/gfold.html :license: MIT :recipe: /`gfold `_/`meta.yaml `_ .. conda:package:: gfold |downloads_gfold| |docker_gfold| :versions: ``1.1.4-2``,  ``1.1.4-1``,  ``1.1.4-0`` :depends gsl: ``2.2*`` :depends libgcc: :depends openblas: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install gfold and update with:: mamba update gfold To create a new environment, run:: mamba create --name myenvname gfold with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/gfold: (see `gfold/tags`_ for valid values for ````) .. |downloads_gfold| image:: https://img.shields.io/conda/dn/bioconda/gfold.svg?style=flat :target: https://anaconda.org/bioconda/gfold :alt: (downloads) .. |docker_gfold| image:: https://quay.io/repository/biocontainers/gfold/status :target: https://quay.io/repository/biocontainers/gfold .. _`gfold/tags`: https://quay.io/repository/biocontainers/gfold?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/gfold/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/gfold/README.html