:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'gget' .. highlight: bash gget ==== .. conda:recipe:: gget :replaces_section_title: :noindex: gget enables efficient querying of genomic databases :homepage: https://github.com/pachterlab/gget :license: BSD / BSD-2-Clause :recipe: /`gget `_/`meta.yaml `_ gget enables efficient querying of genomic databases\, such as Ensembl\, UniProt\, NCBI\, directly into a Python or terminal programming environment. It was designed to support genomic data analysis. .. conda:package:: gget |downloads_gget| |docker_gget| :versions: .. raw:: html
0.28.4-00.28.3-00.28.2-00.28.1-00.27.9-00.27.8-00.27.7-00.27.5-00.27.4-0 ``0.28.4-0``,  ``0.28.3-0``,  ``0.28.2-0``,  ``0.28.1-0``,  ``0.27.9-0``,  ``0.27.8-0``,  ``0.27.7-0``,  ``0.27.5-0``,  ``0.27.4-0``,  ``0.27.3-0``,  ``0.27.2-2``,  ``0.27.2-1``,  ``0.27.2-0``,  ``0.27.0-0``,  ``0.3.13-0``,  ``0.3.12-0``,  ``0.3.11-0``,  ``0.3.10-0``,  ``0.3.9-0``,  ``0.3.7-0``,  ``0.3.5-0``,  ``0.2.7-0``,  ``0.2.6-0``,  ``0.2.5-0``,  ``0.2.3-0``,  ``0.2.2-0``,  ``0.2.1-0``,  ``0.2.0-0``,  ``0.1.2-0``,  ``0.1.1-0``,  ``0.1.0-0``,  ``0.0.24-0`` .. raw:: html
:depends beautifulsoup4: ``>=4.10.0`` :depends curl: :depends ipython: :depends ipywidgets: :depends lxml: :depends matplotlib-base: :depends mysql-connector-python: ``>=8.0.5,<=8.0.29`` :depends numpy: ``>=1.17.2`` :depends openai: :depends openmm: ``7.5.1`` :depends pandas: ``>=1.0.0`` :depends py3dmol: ``>=1.8.0`` :depends python: ``>=3.6`` :depends requests: ``>=2.22.0`` :depends tqdm: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install gget and update with:: mamba update gget To create a new environment, run:: mamba create --name myenvname gget with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/gget: (see `gget/tags`_ for valid values for ````) .. |downloads_gget| image:: https://img.shields.io/conda/dn/bioconda/gget.svg?style=flat :target: https://anaconda.org/bioconda/gget :alt: (downloads) .. |docker_gget| image:: https://quay.io/repository/biocontainers/gget/status :target: https://quay.io/repository/biocontainers/gget .. _`gget/tags`: https://quay.io/repository/biocontainers/gget?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/gget/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/gget/README.html