:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'group_humann2_uniref_abundances_to_go' .. highlight: bash group_humann2_uniref_abundances_to_go ===================================== .. conda:recipe:: group_humann2_uniref_abundances_to_go :replaces_section_title: :noindex: Group abundances of UniRef50 gene families obtained with HUMAnN2 to Gene Ontology \(GO\) slim terms with relative abundances :homepage: https://github.com/ASaiM/group_humann2_uniref_abundances_to_GO :license: Apache 2 :recipe: /`group_humann2_uniref_abundances_to_go `_/`meta.yaml `_ .. conda:package:: group_humann2_uniref_abundances_to_go |downloads_group_humann2_uniref_abundances_to_go| |docker_group_humann2_uniref_abundances_to_go| :versions: ``1.3.0-0``,  ``1.2.3-0``,  ``1.2.1-0``,  ``1.2.0-2``,  ``1.2.0-1``,  ``1.2.0-0`` :depends goatools: :depends humann2: :depends python: ``<3`` :depends wget: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install group_humann2_uniref_abundances_to_go and update with:: mamba update group_humann2_uniref_abundances_to_go To create a new environment, run:: mamba create --name myenvname group_humann2_uniref_abundances_to_go with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/group_humann2_uniref_abundances_to_go: (see `group_humann2_uniref_abundances_to_go/tags`_ for valid values for ````) .. |downloads_group_humann2_uniref_abundances_to_go| image:: https://img.shields.io/conda/dn/bioconda/group_humann2_uniref_abundances_to_go.svg?style=flat :target: https://anaconda.org/bioconda/group_humann2_uniref_abundances_to_go :alt: (downloads) .. |docker_group_humann2_uniref_abundances_to_go| image:: https://quay.io/repository/biocontainers/group_humann2_uniref_abundances_to_go/status :target: https://quay.io/repository/biocontainers/group_humann2_uniref_abundances_to_go .. _`group_humann2_uniref_abundances_to_go/tags`: https://quay.io/repository/biocontainers/group_humann2_uniref_abundances_to_go?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/group_humann2_uniref_abundances_to_go/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/group_humann2_uniref_abundances_to_go/README.html