:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'guessmylt' .. highlight: bash guessmylt ========= .. conda:recipe:: guessmylt :replaces_section_title: :noindex: Software to guess the RNA\-Seq library type. :homepage: https://github.com/NBISweden/GUESSmyLT :license: GPL / GPLv3 :recipe: /`guessmylt `_/`meta.yaml `_ .. conda:package:: guessmylt |downloads_guessmylt| |docker_guessmylt| :versions: ``0.2.5-0`` :depends bcbio-gff: ``0.6.4`` :depends biopython: ``1.67`` :depends bowtie2: ``>=2`` :depends busco: ``3.0.2`` :depends git: ``>=2.11.1`` :depends pysam: ``>=0.13.0`` :depends python: ``>3`` :depends snakemake: ``5.4.*`` :depends trinity: ``2.8.4`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install guessmylt and update with:: mamba update guessmylt To create a new environment, run:: mamba create --name myenvname guessmylt with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/guessmylt: (see `guessmylt/tags`_ for valid values for ````) .. |downloads_guessmylt| image:: https://img.shields.io/conda/dn/bioconda/guessmylt.svg?style=flat :target: https://anaconda.org/bioconda/guessmylt :alt: (downloads) .. |docker_guessmylt| image:: https://quay.io/repository/biocontainers/guessmylt/status :target: https://quay.io/repository/biocontainers/guessmylt .. _`guessmylt/tags`: https://quay.io/repository/biocontainers/guessmylt?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/guessmylt/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/guessmylt/README.html