:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'gunc' .. highlight: bash gunc ==== .. conda:recipe:: gunc :replaces_section_title: :noindex: Python package for detection of chimerism and contamination in prokaryotic genomes. :homepage: https://github.com/grp-bork/gunc :documentation: https://grp-bork.embl-community.io/gunc/ :license: GPL3 / GNU General Public v3 or later (GPLv3+) :recipe: /`gunc `_/`meta.yaml `_ .. conda:package:: gunc |downloads_gunc| |docker_gunc| :versions: ``1.0.6-0``,  ``1.0.5-0``,  ``1.0.4-0``,  ``1.0.3-0``,  ``1.0.2-0``,  ``1.0.1-0``,  ``1.0.0-0`` :depends diamond: ``2.0.4.*`` :depends numpy: :depends pandas: :depends plotly: :depends prodigal: :depends python: ``>=3.6`` :depends requests: ``>=2.22.0`` :depends scipy: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install gunc and update with:: mamba update gunc To create a new environment, run:: mamba create --name myenvname gunc with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/gunc: (see `gunc/tags`_ for valid values for ````) .. |downloads_gunc| image:: https://img.shields.io/conda/dn/bioconda/gunc.svg?style=flat :target: https://anaconda.org/bioconda/gunc :alt: (downloads) .. |docker_gunc| image:: https://quay.io/repository/biocontainers/gunc/status :target: https://quay.io/repository/biocontainers/gunc .. _`gunc/tags`: https://quay.io/repository/biocontainers/gunc?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/gunc/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/gunc/README.html