:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'hap.py' .. highlight: bash hap.py ====== .. conda:recipe:: hap.py :replaces_section_title: :noindex: Haplotype VCF comparison tools :homepage: https://github.com/Illumina/hap.py :license: BSD / BSD-2-Clause :recipe: /`hap.py `_/`meta.yaml `_ .. conda:package:: hap.py |downloads_hap.py| |docker_hap.py| :versions: .. raw:: html
0.3.15-00.3.14-00.3.13-00.3.12-20.3.12-10.3.12-00.3.10-00.3.7-10.3.7-0 ``0.3.15-0``,  ``0.3.14-0``,  ``0.3.13-0``,  ``0.3.12-2``,  ``0.3.12-1``,  ``0.3.12-0``,  ``0.3.10-0``,  ``0.3.7-1``,  ``0.3.7-0``,  ``0.2.9-1``,  ``0.2.9-0`` .. raw:: html
:depends bcftools: :depends boost-cpp: ``>=1.74.0,<1.74.1.0a0`` :depends bx-python: :depends htslib: ``>=1.17,<1.20.0a0`` :depends libgcc-ng: ``>=12`` :depends libstdcxx-ng: ``>=12`` :depends nose: :depends numpy: :depends pandas: :depends pybedtools: :depends pysam: ``>=0.20.0,<1.0a0`` :depends python: ``>=2.7,<2.8.0a0`` :depends python_abi: ``2.7.* *_cp27mu`` :depends samtools: :depends scipy: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install hap.py and update with:: mamba update hap.py To create a new environment, run:: mamba create --name myenvname hap.py with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/hap.py: (see `hap.py/tags`_ for valid values for ````) .. |downloads_hap.py| image:: https://img.shields.io/conda/dn/bioconda/hap.py.svg?style=flat :target: https://anaconda.org/bioconda/hap.py :alt: (downloads) .. |docker_hap.py| image:: https://quay.io/repository/biocontainers/hap.py/status :target: https://quay.io/repository/biocontainers/hap.py .. _`hap.py/tags`: https://quay.io/repository/biocontainers/hap.py?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/hap.py/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/hap.py/README.html